物種(zhǒng)縮寫
正如“VectorBuilder載體是視道如何命名的?”文中所講,在使用VectorBuilder提供的喝務ORF數據庫設計載體後(hòu),載體名稱中的基因名稱亦會(huì)被(是錯bèi)賦予一個物種(zhǒn雨河g)縮寫(Species abbreviations)進(jìn)行區分。物種是雪(zhǒng)縮寫如下表所示:
常見物種(zhǒng)
常用名稱(Common name) | 科學(xué)名稱(Scientific name) | Taxonomy ID | VectorBuilder物種(zh銀音ǒng)縮寫 |
Human | Homo sapiens | 9606 | h |
Mouse | Mus musculus | 10090 | m |
Rat | Rattus norvegicus | 10116 | r |
哺乳動物(Mammals)
常用名稱(Common name討跳) | 科學(xué)名稱(Scientific name) | Taxonomy ID | VectorBuilder物種(zhǒng)縮寫拿文 |
Alpaca | Vicugna pacos | 30538 | vpa_ |
Armadillo | Dasypus novemcinctus | 9361 | dno_ |
Bushbaby | Otolemur garnettii | 30611 | oga_ |
Cat | Felis catus | 9685 | ct |
Chimpanzee | Pan troglodytes | 9598 | ch |
Cow | Bos taurus | 9913 | cw |
Dog | Canis lupus familiaris | 9615 | dg |
Dolphin | Tursiops truncatus | 9739 | ttr_ |
Elephant | Loxodonta africa草通na | 9785 | laf_ |
Ferret | Mustela putorius furo | 9669 | mpu_ |
Gibbon | Nomascus leucogenys | 61853 | gi |
Gorilla | Gorilla gorilla gorilla | 9595 | go |
Guinea pig | Cavia porcellus森鄉 | 10141 | cpo_ |
Hedgehog | Erinaceus europaeus | 9365 | eeu_ |
Horse | Equus caballus | 9796 | ho |
Hyrax | Procavia capensis | 9813 | pca_ |
Kangaroo rat | Dipodomys ordii | 10020 | dor_ |
Lesser hedgehog tenrec | Echinops telfairi | 9371 | ete_ |
Macaque | Macaca mulatta | 9544 | ma |
Marmoset | Callithrix jacchus | 9483 | cja_ |
Megabat | Pteropus vampyrus | 132908 | pva_ |
Microbat | Myotis lucifugus | 59463 | mlu_ |
Mouse lemur | Microcebus murinus | 30608 | mmu_ |
Olive baboon | Papio anubis | 9555 | pan_ |
Opossum | Monodelphis domest土雪ica | 13616 | mdo_ |
Orangutan | Pongo abelii | 9601 | or |
Panda | Ailuropoda mela行線noleuca | 9646 | pd |
Pig | Sus scrofa | 9823 | pg |
Pika | Ochotona princeps | 9978 | opr_ |
Rabbit | Oryctolagus cunicul子大us | 9986 | ra |
Platypus | Ornithorhynchus anatinus | 9258 | oan_ |
Sheep | Ovis aries | 9940 | sh |
Shrew | Sorex araneus | 42254 | sar_ |
Sloth | Choloepus hoffmanni | 9358 | cho_ |
Squirrel | Ictidomys tridecemlineatus懂物 | 43179 | sq |
Tasmanian devil | Sarcophilus harri近匠sii | 9305 | sha_ |
Tree shrew | Tupaia belangeri | 37347 | tbe_ |
Green monkey | Chlorocebus sabaeus | 60711 | ve |
Wallaby | Macropus eugenii | 9315 | meu_ |
鳥類(Birds)
常用名稱(Common name)司南 | 科學(xué)名稱(Scien樂體tific name) | Taxonomy ID | VectorBuilder物種器大(zhǒng)縮寫 |
Chicken | Gallus gallus | 9031 | gga_ |
Duck | Anas platyrhync和數hos | 8839 | apl_ |
Flycatcher | Ficedula albicollis | 59894 | fal_ |
Turkey | Meleagris gallopa笑時vo | 9103 | mga_ |
Zebra finch | Taeniopygia guttata | 59729 | tgu_ |
爬行動物(Reptiles)
常用名稱(Common name) | 科學(xué)名稱(Scientifi物新c name) | Taxonomy ID | VectorBuilder物種(zhǒng)縮寫 |
Anole lizard | Anolis carolinens一分is | 28377 | aca_ |
Chinese softshell turtle | Pelodiscus sinensis | 13735 | psi_ |
Amazon molly | Poecilia formosa | 48698 | pfo_ |
兩(liǎng)栖動物(Amphibian紙讀s)
常用名稱(Common name) | 科學(xué)名稱(Scientific name) | Taxonomy ID | VectorBuilder物種(zhǒng)縮寫 |
Western clawed fro理雜g | Xenopus tropicalis一門 | 8364 | xtr_ |
魚類(Fish)
常用名稱(Common name) | 科學(xué)名稱(Scientif讀刀ic name) | Taxonomy ID | VectorBuilder物種(zhǒng遠年)縮寫 |
Cave fish | Astyanax mexicanus | 7994 | ame_ |
Cod | Gadus morhua | 8049 | gmo_ |
Coelacanth | Latimeria chalumnae | 7897 | lch_ |
Fugu | Takifugu rubripes | 31033 | tru_ |
Lamprey | Petromyzon marinus上冷 | 7757 | pma_ |
Medaka | Oryzias latipes | 8090 | ola_ |
Platyfish | Xiphophorus maculatus | 8083 | xma_ |
Spotted gar | Lepisosteus oculatus朋能 | 7918 | loc_ |
Stickleback | Gasterosteus aculeatus | 69293 | gac_ |
Tetraodon | Tetraodon nigroviridis | 99883 | tni_ |
Tilapia | Oreochromis niloticus | 8128 | oni_ |
Zebrafish | Danio rerio | 7955 | dre_ |
被(bèi)囊動物(Tunicates)
常用名稱(Common name) | 科學(xué)名稱(Scientific name) | Taxonomy ID | VectorBuilder物種(zhǒng科森)縮寫 |
Solitary sea squirt | Ciona savignyi | 51511 | csa_ |
Vase tunicate | Ciona intestinalis | 7719 | cin_ |
昆蟲(Insects)
常用名稱(Common name) | 科學(xué)名稱(Scientifi什高c name) | Taxonomy ID | VectorBuilder物種(zhǒng)縮寫 |
Fruitfly | Drosophila melanogast話很er | 7227 | dme_ |
植物(Plants)
常用名稱(Common name) | 科學(xué)名稱(Scientific name) | Taxonomy ID | VectorBuilder物種(zhǒng)縮寫 |
Rice | Oryza sativa | 4530 | osa_ |
Thale cress | Arabidopsis thal行可iana | 3702 | ath_ |
酵母(Yeast)
常用名稱(Common name) | 科學(xué)名稱(Scientific name) | Taxonomy ID | VectorBuilder物種(z讀河hǒng)縮寫 |
Baker's yeast | Saccharomyces cerevisiae | 4932 | sce_ |
Fission yeast | Schizosaccharomyces pombe | 4896 | spo_ |
細菌(Bacteria)
常用名稱(Common name)話吧 | 科學(xué)名稱(Scientif習工ic name) | Taxonomy ID | VectorBuilder物種(zhǒng)縮寫 |
Bacillus | Bacillus subtilis | 1423 | bsu_ |
E.coli | Escherichia coli | 562 | eco_ |